1 HOK comparison of CASAL and Casal2 model configurations

This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 8 Casal2 model configurations (3 BetaDiff, 2 CppAD, and 3 ADOL-C).

The CASAL model sensitivity 1 has a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6).

The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-9 vs. 1e-6). The Casal2 CppAD models have a tolerance value of 1e-9.

1.1 HOK model characteristics

The main characteristics of the Test Case HOK (hoki) CASAL model are:

  • one stock, ages 1 - 17
  • one area, although many characteristics are separated into "east" and "west"
  • years 1972 - 2018, projection years 2019 - 2023
  • five time steps: Oct_Nov, Dec_Mar, Apr_Jun, End_Jun, and Jul_Sep
  • five stock categories: west.sa, east.cr, west.cr, west.wc, and east.cs (labeled "stock.area")
  • five migration processes, which have age-specific proportions specified
  • sex-specific natural mortality-at-age is double exponential
  • area-specific von Bertalanffy age-length relationship
  • area-specific length-weight relationship (\(W = aL^b\))
  • area-specific Beverton-Holt stock-recruitment relationships, with steepness (h) 0.75
  • ageing error is specified
  • surveys with double normal selectivity
  • six area-specific fisheries with double normal selectivity

Observation data include:

  • survey indices
  • survey proportions-at-age
  • fishery proportions-at-age

Parameters estimated include:

  • area-specific B0
  • parameters for the natural mortality-at-age ogive
  • catchability (q) for the surveys
  • parameters for the selectivity curves for the surveys
  • parameters for the selectivity curves for the fisheries
  • migration proportions by age
  • area-specific YCS (recruitment deviations)

1.2 R environment

## [1] "Tue Jul 21 10:01:15 2020"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
## 
## locale:
##  [1] LC_CTYPE=en_NZ.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_NZ.UTF-8        LC_COLLATE=en_NZ.UTF-8    
##  [5] LC_MONETARY=en_NZ.UTF-8    LC_MESSAGES=en_NZ.UTF-8   
##  [7] LC_PAPER=en_GB.UTF_8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] casal2_1.0     casal_2.30     devtools_2.3.0 usethis_1.6.1  rlist_0.4.6.1 
## [6] ggplot2_3.3.2 
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_1.0.5        pillar_1.4.6      compiler_3.6.0    remotes_2.1.1    
##  [5] prettyunits_1.1.1 tools_3.6.0       testthat_2.3.2    pkgload_1.1.0    
##  [9] pkgbuild_1.1.0    digest_0.6.25     memoise_1.1.0     evaluate_0.14    
## [13] lifecycle_0.2.0   tibble_3.0.3      gtable_0.3.0      pkgconfig_2.0.3  
## [17] rlang_0.4.7       cli_2.0.2         yaml_2.2.1        xfun_0.15        
## [21] withr_2.2.0       dplyr_0.8.5       stringr_1.4.0     knitr_1.29       
## [25] desc_1.2.0        vctrs_0.3.2       fs_1.4.2          rprojroot_1.3-2  
## [29] grid_3.6.0        tidyselect_1.1.0  glue_1.4.1        data.table_1.12.8
## [33] R6_2.4.1          processx_3.4.3    fansi_0.4.1       rmarkdown_2.3    
## [37] sessioninfo_1.1.1 callr_3.4.3       purrr_0.3.4       magrittr_1.5     
## [41] backports_1.1.8   ps_1.3.3          scales_1.1.1      ellipsis_0.3.1   
## [45] htmltools_0.5.0   assertthat_0.2.1  colorspace_1.4-1  stringi_1.4.6    
## [49] munsell_0.5.0     crayon_1.3.4

1.3 CASAL and Casal2 model output

source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')

## Tables

Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results

CASAL parameter estimates
rownames Base_Model Sensitivity_1 Percent_Diff
q[CSacous].q                0.43120 0.43120 0.000
q[WCacous].q                0.30030 0.30020 0.033
q[CRsum].q                0.07431 0.07431 0.000
q[SAsum].q                0.05925 0.05925 0.000
q[SAaut].q                0.06717 0.06717 0.000
relative_abundance[CRsumbio].cv_process_error 0.14050 0.14050 0.000
relative_abundance[SAsumbio].cv_process_error 0.43060 0.43060 0.000
log_B0_total                  14.34000 14.34000 0.000
B0_prop_stock1                  0.32870 0.32870 0.000
natural_mortality.all              0.29600 0.29600 0.000
selectivity[Wspsl].shift_a          -0.21740 -0.21740 0.000
recruitment[E].YCS1             0.44780 0.44780 0.000
recruitment[E].YCS2             0.72680 0.72680 0.000
recruitment[E].YCS3             0.78450 0.78450 0.000
recruitment[E].YCS4             1.36000 1.36000 0.000
recruitment[E].YCS5             0.98770 0.98780 -0.010
recruitment[E].YCS6             0.32930 0.32930 0.000
recruitment[E].YCS7             0.44720 0.44720 0.000
recruitment[E].YCS8             0.26560 0.26560 0.000
recruitment[E].YCS9             0.43420 0.43420 0.000
recruitment[E].YCS10            0.48800 0.48800 0.000
recruitment[E].YCS11            0.39570 0.39570 0.000
recruitment[E].YCS12            0.21790 0.21790 0.000
recruitment[E].YCS13            1.03600 1.03600 0.000
recruitment[E].YCS14            0.95890 0.95890 0.000
recruitment[E].YCS15            0.42900 0.42900 0.000
recruitment[E].YCS16            0.13810 0.13810 0.000
recruitment[E].YCS17            0.37500 0.37500 0.000
recruitment[E].YCS18            0.39170 0.39160 0.026
recruitment[E].YCS19            0.38310 0.38310 0.000
recruitment[E].YCS20            0.56290 0.56290 0.000
recruitment[E].YCS21            0.26400 0.26400 0.000
recruitment[E].YCS22            0.28450 0.28450 0.000
recruitment[E].YCS23            0.45000 0.45000 0.000
recruitment[E].YCS24            0.25310 0.25310 0.000
recruitment[E].YCS25            0.06000 0.06000 0.000
recruitment[E].YCS26            0.46220 0.46220 0.000
recruitment[E].YCS27            0.16160 0.16160 0.000
recruitment[E].YCS28            0.26690 0.26690 0.000
recruitment[E].YCS29            0.50040 0.50040 0.000
recruitment[E].YCS30            0.52000 0.52000 0.000
recruitment[E].YCS31            0.50880 0.50880 0.000
recruitment[E].YCS32            0.60060 0.60060 0.000
recruitment[E].YCS33            0.52210 0.52210 0.000
recruitment[E].YCS34            0.37300 0.37300 0.000
recruitment[E].YCS35            0.52680 0.52680 0.000
recruitment[E].YCS36            0.15860 0.15860 0.000
recruitment[E].YCS37            0.66060 0.66060 0.000
recruitment[E].YCS38            0.15600 0.15600 0.000
recruitment[E].YCS39            0.18580 0.18580 0.000
recruitment[E].YCS40            0.73060 0.73060 0.000
recruitment[E].YCS41            0.73910 0.73900 0.014
recruitment[E].YCS42            1.19500 1.19500 0.000
recruitment[W].YCS1             0.45700 0.45700 0.000
recruitment[W].YCS2             0.82220 0.82220 0.000
recruitment[W].YCS3             0.67000 0.67000 0.000
recruitment[W].YCS4             0.65390 0.65390 0.000
recruitment[W].YCS5             0.46590 0.46590 0.000
recruitment[W].YCS6             0.51510 0.51510 0.000
recruitment[W].YCS7             0.57820 0.57820 0.000
recruitment[W].YCS8             0.47330 0.47330 0.000
recruitment[W].YCS9             0.87190 0.87190 0.000
recruitment[W].YCS10            0.83640 0.83650 -0.012
recruitment[W].YCS11            0.32020 0.32020 0.000
recruitment[W].YCS12            0.16500 0.16500 0.000
recruitment[W].YCS13            1.47600 1.47600 0.000
recruitment[W].YCS14            0.77270 0.77280 -0.013
recruitment[W].YCS15            0.08135 0.08135 0.000
recruitment[W].YCS16            0.08158 0.08158 0.000
recruitment[W].YCS17            0.89280 0.89280 0.000
recruitment[W].YCS18            1.26800 1.26800 0.000
recruitment[W].YCS19            0.37720 0.37720 0.000
recruitment[W].YCS20            0.95940 0.95940 0.000
recruitment[W].YCS21            0.22110 0.22110 0.000
recruitment[W].YCS22            0.19720 0.19720 0.000
recruitment[W].YCS23            0.23790 0.23800 -0.042
recruitment[W].YCS24            0.20290 0.20290 0.000
recruitment[W].YCS25            0.06000 0.06000 0.000
recruitment[W].YCS26            0.37300 0.37300 0.000
recruitment[W].YCS27            0.09548 0.09548 0.000
recruitment[W].YCS28            0.79560 0.79560 0.000
recruitment[W].YCS29            0.46520 0.46520 0.000
recruitment[W].YCS30            0.51660 0.51660 0.000
recruitment[W].YCS31            0.51130 0.51130 0.000
recruitment[W].YCS32            0.75540 0.75540 0.000
recruitment[W].YCS33            0.63890 0.63890 0.000
recruitment[W].YCS34            0.61690 0.61690 0.000
recruitment[W].YCS35            0.57840 0.57840 0.000
recruitment[W].YCS36            0.14550 0.14550 0.000
recruitment[W].YCS37            0.97480 0.97480 0.000
recruitment[W].YCS38            0.16020 0.16020 0.000
recruitment[W].YCS39            0.24440 0.24440 0.000
recruitment[W].YCS40            2.19700 2.19700 0.000
recruitment[W].YCS41            2.15200 2.15200 0.000
recruitment[W].YCS42            1.19500 1.19500 0.000
migration[Whome].rates_all1       0.32780 0.32780 0.000
migration[Whome].rates_all2       0.30780 0.30780 0.000
migration[Whome].rates_all3       0.47620 0.47620 0.000
migration[Whome].rates_all4       0.14180 0.14180 0.000
migration[Whome].rates_all5       0.46850 0.46840 0.021
migration[Whome].rates_all6       0.74980 0.75030 -0.067
migration[Whome].rates_all7       0.79470 0.78840 0.793
migration[Whome].rates_all8       1.00000 1.00000 0.000
migration[Espmg].rates_all1       0.00566 0.00566 0.000
migration[Espmg].rates_all2       0.16020 0.16020 0.000
migration[Espmg].rates_all3       0.32410 0.32410 0.000
migration[Espmg].rates_all4       0.43120 0.43120 0.000
migration[Espmg].rates_all5       0.38550 0.38550 0.000
migration[Espmg].rates_all6       0.46540 0.46530 0.021
migration[Espmg].rates_all7       0.59900 0.59900 0.000
migration[Espmg].rates_all8       0.60780 0.60780 0.000
migration[Wspmg].rates_all1       0.10610 0.10610 0.000
migration[Wspmg].rates_all2       0.28770 0.28770 0.000
migration[Wspmg].rates_all3       0.27080 0.27080 0.000
migration[Wspmg].rates_all4       0.45530 0.45530 0.000
migration[Wspmg].rates_all5       0.48470 0.48470 0.000
migration[Wspmg].rates_all6       0.52710 0.52710 0.000
migration[Wspmg].rates_all7       0.66060 0.66060 0.000
migration[Wspmg].rates_all8       0.59630 0.59630 0.000
selectivity[Enspsl].all1             3.56700 3.56700 0.000
selectivity[Enspsl].all2             1.22100 1.22100 0.000
selectivity[Enspsl].all3             15.71000 15.71000 0.000
selectivity[Wnspsl].all1             5.34100 5.34100 0.000
selectivity[Wnspsl].all2             2.83900 2.83900 0.000
selectivity[Wnspsl].all3             13.38000 13.38000 0.000
selectivity[Espsl].all1             10.88000 10.88000 0.000
selectivity[Espsl].all2             11.68000 11.68000 0.000
selectivity[Espsl].all3             3.98200 3.98200 0.000
selectivity[CRsl].all1             1.00000 1.00000 0.000
selectivity[CRsl].all2             1.00000 1.00000 0.000
selectivity[CRsl].all3             9.30000 9.30000 0.000
selectivity[SAsl].all1             14.25000 14.25000 0.000
selectivity[SAsl].all2             8.75500 8.75600 -0.011
selectivity[SAsl].all3             1.31500 1.31500 0.000
Casal2 parameter estimates
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
catchability[CSacous].q                0.42786 0.42786 0.43420 0.43116 0.43116 0.42724 0.42724 0.42786
catchability[WCacous].q                0.31244 0.31244 0.29704 0.30024 0.30024 0.31284 0.31284 0.31244
catchability[CRsum].q                0.06811 0.06811 0.07599 0.07431 0.07431 0.06832 0.06832 0.06811
catchability[SAsum].q                0.06706 0.06706 0.05603 0.05925 0.05925 0.06717 0.06717 0.06706
catchability[SAaut].q                0.07563 0.07563 0.06351 0.06717 0.06717 0.07578 0.07578 0.07563
observation[CRsumbio].process_error    0.14089 0.14089 0.14018 0.14048 0.14048 0.14094 0.14094 0.14089
observation[SAsumbio].process_error    0.42381 0.42381 0.43092 0.43061 0.43061 0.42364 0.42364 0.42381
process[recruit_E].b0               547497.00000 547497.00000 554646.00000 555125.00000 555125.00000 548394.00000 548395.00000 547497.00000
process[recruit_W].b0               1083360.00000 1083360.00000 1147420.00000 1133680.00000 1133680.00000 1082670.00000 1082670.00000 1083360.00000
process[Instant_mortality].m{west.sa}              0.31293 0.31293 0.29179 0.29598 0.29598 0.31271 0.31271 0.31293
time_varying[shifted_mu].a                -0.22959 -0.22959 -0.21691 -0.21744 -0.21744 -0.22921 -0.22921 -0.22959
process[recruit_E].ycs_values{1975} 0.44589 0.44589 0.44745 0.44782 0.44782 0.44537 0.44537 0.44589
process[recruit_E].ycs_values{1976} 0.73052 0.73052 0.72423 0.72680 0.72680 0.72939 0.72939 0.73052
process[recruit_E].ycs_values{1977} 0.79332 0.79333 0.78092 0.78454 0.78454 0.79231 0.79231 0.79332
process[recruit_E].ycs_values{1978} 1.38828 1.38827 1.35041 1.36001 1.36001 1.38645 1.38645 1.38827
process[recruit_E].ycs_values{1979} 1.00372 1.00372 0.98203 0.98776 0.98776 1.00265 1.00265 1.00372
process[recruit_E].ycs_values{1980} 0.33462 0.33462 0.32761 0.32932 0.32932 0.33437 0.33437 0.33462
process[recruit_E].ycs_values{1981} 0.45535 0.45535 0.44472 0.44723 0.44723 0.45502 0.45502 0.45535
process[recruit_E].ycs_values{1982} 0.26989 0.26989 0.26428 0.26556 0.26556 0.26974 0.26974 0.26989
process[recruit_E].ycs_values{1983} 0.44100 0.44100 0.43212 0.43418 0.43418 0.44106 0.44106 0.44100
process[recruit_E].ycs_values{1984} 0.49423 0.49422 0.48613 0.48804 0.48804 0.49412 0.49412 0.49422
process[recruit_E].ycs_values{1985} 0.40014 0.40014 0.39436 0.39570 0.39570 0.40010 0.40010 0.40014
process[recruit_E].ycs_values{1986} 0.21982 0.21982 0.21736 0.21791 0.21791 0.21978 0.21978 0.21982
process[recruit_E].ycs_values{1987} 1.04095 1.04095 1.03439 1.03640 1.03640 1.04131 1.04131 1.04095
process[recruit_E].ycs_values{1988} 0.96315 0.96315 0.95757 0.95891 0.95891 0.96346 0.96346 0.96315
process[recruit_E].ycs_values{1989} 0.43112 0.43112 0.42864 0.42899 0.42899 0.43095 0.43095 0.43112
process[recruit_E].ycs_values{1990} 0.13798 0.13798 0.13817 0.13810 0.13810 0.13797 0.13797 0.13798
process[recruit_E].ycs_values{1991} 0.37335 0.37335 0.37513 0.37500 0.37500 0.37385 0.37385 0.37335
process[recruit_E].ycs_values{1992} 0.38757 0.38757 0.39254 0.39164 0.39164 0.38858 0.38858 0.38757
process[recruit_E].ycs_values{1993} 0.37988 0.37988 0.38408 0.38310 0.38310 0.37995 0.37995 0.37988
process[recruit_E].ycs_values{1994} 0.55726 0.55726 0.56442 0.56285 0.56285 0.55794 0.55794 0.55726
process[recruit_E].ycs_values{1995} 0.26178 0.26178 0.26473 0.26399 0.26399 0.26178 0.26178 0.26178
process[recruit_E].ycs_values{1996} 0.28248 0.28248 0.28518 0.28447 0.28447 0.28251 0.28251 0.28248
process[recruit_E].ycs_values{1997} 0.44759 0.44759 0.45107 0.45003 0.45003 0.44781 0.44781 0.44759
process[recruit_E].ycs_values{1998} 0.25249 0.25249 0.25346 0.25307 0.25307 0.25264 0.25264 0.25249
process[recruit_E].ycs_values{1999} 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000
process[recruit_E].ycs_values{2000} 0.45987 0.45987 0.46312 0.46220 0.46220 0.46013 0.46013 0.45987
process[recruit_E].ycs_values{2001} 0.16087 0.16087 0.16193 0.16165 0.16165 0.16086 0.16086 0.16087
process[recruit_E].ycs_values{2002} 0.26560 0.26560 0.26718 0.26689 0.26689 0.26611 0.26611 0.26560
process[recruit_E].ycs_values{2003} 0.49943 0.49943 0.50087 0.50038 0.50038 0.49959 0.49959 0.49943
process[recruit_E].ycs_values{2004} 0.52031 0.52031 0.52021 0.52003 0.52003 0.52053 0.52053 0.52031
process[recruit_E].ycs_values{2005} 0.50754 0.50754 0.50936 0.50882 0.50882 0.50764 0.50764 0.50754
process[recruit_E].ycs_values{2006} 0.59986 0.59986 0.60098 0.60055 0.60055 0.60013 0.60013 0.59986
process[recruit_E].ycs_values{2007} 0.52080 0.52080 0.52269 0.52215 0.52215 0.52087 0.52088 0.52080
process[recruit_E].ycs_values{2008} 0.37047 0.37047 0.37365 0.37300 0.37300 0.37115 0.37115 0.37047
process[recruit_E].ycs_values{2009} 0.52786 0.52786 0.52700 0.52681 0.52681 0.52789 0.52790 0.52786
process[recruit_E].ycs_values{2010} 0.15690 0.15690 0.15912 0.15864 0.15864 0.15695 0.15695 0.15690
process[recruit_E].ycs_values{2011} 0.66029 0.66029 0.66140 0.66058 0.66058 0.66047 0.66047 0.66029
process[recruit_E].ycs_values{2012} 0.15558 0.15558 0.15627 0.15600 0.15600 0.15554 0.15554 0.15558
process[recruit_E].ycs_values{2013} 0.18518 0.18518 0.18619 0.18584 0.18584 0.18518 0.18518 0.18518
process[recruit_E].ycs_values{2014} 0.72808 0.72808 0.73181 0.73062 0.73062 0.72844 0.72844 0.72808
process[recruit_E].ycs_values{2015} 0.75231 0.75231 0.73482 0.73900 0.73900 0.75586 0.75586 0.75231
process[recruit_E].ycs_values{2016} 1.18939 1.18939 1.19548 1.19515 1.19515 1.18886 1.18886 1.18939
process[recruit_W].ycs_values{1975} 0.45872 0.45872 0.45378 0.45702 0.45702 0.45869 0.45869 0.45872
process[recruit_W].ycs_values{1976} 0.81433 0.81433 0.83725 0.82218 0.82218 0.81422 0.81422 0.81433
process[recruit_W].ycs_values{1977} 0.68494 0.68494 0.67742 0.67000 0.67000 0.68515 0.68515 0.68494
process[recruit_W].ycs_values{1978} 0.66906 0.66905 0.65220 0.65390 0.65390 0.66937 0.66937 0.66905
process[recruit_W].ycs_values{1979} 0.47276 0.47276 0.46524 0.46590 0.46590 0.47307 0.47307 0.47276
process[recruit_W].ycs_values{1980} 0.52052 0.52052 0.51447 0.51512 0.51512 0.52064 0.52064 0.52052
process[recruit_W].ycs_values{1981} 0.58328 0.58328 0.57669 0.57824 0.57824 0.58344 0.58344 0.58328
process[recruit_W].ycs_values{1982} 0.47440 0.47440 0.47274 0.47328 0.47328 0.47462 0.47462 0.47440
process[recruit_W].ycs_values{1983} 0.87375 0.87375 0.87083 0.87192 0.87192 0.87309 0.87309 0.87375
process[recruit_W].ycs_values{1984} 0.83738 0.83738 0.83450 0.83646 0.83646 0.83633 0.83633 0.83738
process[recruit_W].ycs_values{1985} 0.31975 0.31975 0.31974 0.32024 0.32024 0.31942 0.31942 0.31975
process[recruit_W].ycs_values{1986} 0.16484 0.16484 0.16508 0.16497 0.16497 0.16493 0.16493 0.16484
process[recruit_W].ycs_values{1987} 1.48065 1.48066 1.47826 1.47555 1.47555 1.48007 1.48007 1.48066
process[recruit_W].ycs_values{1988} 0.77530 0.77530 0.77430 0.77276 0.77276 0.77454 0.77454 0.77530
process[recruit_W].ycs_values{1989} 0.08147 0.08147 0.08138 0.08134 0.08134 0.08148 0.08148 0.08147
process[recruit_W].ycs_values{1990} 0.08180 0.08180 0.08150 0.08158 0.08158 0.08183 0.08183 0.08180
process[recruit_W].ycs_values{1991} 0.89189 0.89189 0.89449 0.89280 0.89280 0.89197 0.89197 0.89189
process[recruit_W].ycs_values{1992} 1.26783 1.26783 1.26684 1.26778 1.26778 1.26757 1.26757 1.26783
process[recruit_W].ycs_values{1993} 0.37648 0.37648 0.37692 0.37722 0.37722 0.37652 0.37652 0.37648
process[recruit_W].ycs_values{1994} 0.95557 0.95557 0.95968 0.95939 0.95939 0.95579 0.95579 0.95557
process[recruit_W].ycs_values{1995} 0.22015 0.22015 0.22108 0.22113 0.22113 0.22026 0.22026 0.22015
process[recruit_W].ycs_values{1996} 0.19626 0.19626 0.19696 0.19718 0.19718 0.19632 0.19632 0.19626
process[recruit_W].ycs_values{1997} 0.23678 0.23678 0.23766 0.23795 0.23795 0.23643 0.23643 0.23678
process[recruit_W].ycs_values{1998} 0.20061 0.20061 0.20306 0.20292 0.20292 0.20041 0.20041 0.20061
process[recruit_W].ycs_values{1999} 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000 0.06000
process[recruit_W].ycs_values{2000} 0.37133 0.37133 0.37293 0.37304 0.37304 0.37089 0.37089 0.37133
process[recruit_W].ycs_values{2001} 0.09510 0.09510 0.09549 0.09548 0.09548 0.09506 0.09506 0.09510
process[recruit_W].ycs_values{2002} 0.79576 0.79576 0.79480 0.79558 0.79558 0.79553 0.79553 0.79576
process[recruit_W].ycs_values{2003} 0.46588 0.46588 0.46452 0.46517 0.46517 0.46570 0.46570 0.46588
process[recruit_W].ycs_values{2004} 0.51784 0.51784 0.51586 0.51662 0.51662 0.51761 0.51761 0.51784
process[recruit_W].ycs_values{2005} 0.51314 0.51314 0.51035 0.51126 0.51126 0.51305 0.51305 0.51314
process[recruit_W].ycs_values{2006} 0.75487 0.75487 0.75494 0.75544 0.75544 0.75475 0.75475 0.75487
process[recruit_W].ycs_values{2007} 0.63676 0.63676 0.63887 0.63891 0.63891 0.63692 0.63692 0.63676
process[recruit_W].ycs_values{2008} 0.61614 0.61614 0.61662 0.61686 0.61686 0.61564 0.61564 0.61614
process[recruit_W].ycs_values{2009} 0.57292 0.57292 0.57930 0.57841 0.57841 0.57305 0.57305 0.57292
process[recruit_W].ycs_values{2010} 0.14626 0.14626 0.14523 0.14547 0.14547 0.14618 0.14618 0.14626
process[recruit_W].ycs_values{2011} 0.96669 0.96669 0.97556 0.97478 0.97478 0.96708 0.96708 0.96669
process[recruit_W].ycs_values{2012} 0.15897 0.15897 0.16026 0.16016 0.16016 0.15909 0.15909 0.15897
process[recruit_W].ycs_values{2013} 0.24389 0.24389 0.24450 0.24444 0.24444 0.24402 0.24402 0.24389
process[recruit_W].ycs_values{2014} 2.18474 2.18473 2.19862 2.19657 2.19657 2.18651 2.18651 2.18474
process[recruit_W].ycs_values{2015} 2.14969 2.14969 2.15408 2.15204 2.15204 2.14758 2.14758 2.14969
process[recruit_W].ycs_values{2016} 1.18962 1.18962 1.19572 1.19539 1.19539 1.18909 1.18909 1.18962
selectivity[sel_Whome].v{1}             0.32136 0.32136 0.33095 0.32783 0.32783 0.32193 0.32193 0.32136
selectivity[sel_Whome].v{2}             0.28386 0.28386 0.31420 0.30778 0.30778 0.28491 0.28491 0.28386
selectivity[sel_Whome].v{3}             0.45775 0.45775 0.47701 0.47620 0.47620 0.45972 0.45972 0.45775
selectivity[sel_Whome].v{4}             0.13502 0.13502 0.13931 0.14184 0.14184 0.13549 0.13549 0.13502
selectivity[sel_Whome].v{5}             0.43169 0.43169 0.47567 0.46836 0.46836 0.43782 0.43782 0.43169
selectivity[sel_Whome].v{6}             0.71891 0.71892 0.74804 0.75026 0.75026 0.70822 0.70821 0.71891
selectivity[sel_Whome].v{7}             0.75959 0.75950 0.73641 0.78841 0.78841 0.99976 0.99986 0.75961
selectivity[sel_Espmg].v{1}             0.00564 0.00564 0.00563 0.00566 0.00566 0.00564 0.00564 0.00564
selectivity[sel_Espmg].v{2}             0.15901 0.15901 0.15979 0.16021 0.16021 0.15912 0.15912 0.15901
selectivity[sel_Espmg].v{3}             0.32056 0.32056 0.32376 0.32411 0.32411 0.32082 0.32082 0.32056
selectivity[sel_Espmg].v{4}             0.42513 0.42513 0.43131 0.43123 0.43123 0.42547 0.42547 0.42513
selectivity[sel_Espmg].v{5}             0.37927 0.37927 0.38589 0.38546 0.38546 0.37953 0.37953 0.37927
selectivity[sel_Espmg].v{6}             0.45847 0.45847 0.46590 0.46535 0.46535 0.45876 0.45876 0.45847
selectivity[sel_Espmg].v{7}             0.59044 0.59044 0.59969 0.59902 0.59902 0.59081 0.59081 0.59044
selectivity[sel_Espmg].v{8}             0.61064 0.61064 0.60635 0.60778 0.60778 0.61100 0.61100 0.61064
selectivity[sel_Wspmg].v{1}             0.10553 0.10553 0.10546 0.10614 0.10614 0.10556 0.10556 0.10553
selectivity[sel_Wspmg].v{2}             0.29139 0.29139 0.28554 0.28774 0.28774 0.29136 0.29136 0.29139
selectivity[sel_Wspmg].v{3}             0.27066 0.27066 0.27081 0.27076 0.27076 0.27068 0.27068 0.27066
selectivity[sel_Wspmg].v{4}             0.45520 0.45520 0.45573 0.45525 0.45525 0.45527 0.45527 0.45520
selectivity[sel_Wspmg].v{5}             0.48434 0.48434 0.48520 0.48466 0.48466 0.48421 0.48421 0.48434
selectivity[sel_Wspmg].v{6}             0.52398 0.52398 0.52827 0.52711 0.52711 0.52496 0.52496 0.52398
selectivity[sel_Wspmg].v{7}             0.65591 0.65591 0.66264 0.66062 0.66062 0.65298 0.65298 0.65591
selectivity[sel_Wspmg].v{8}             0.60101 0.60101 0.59400 0.59627 0.59627 0.60153 0.60153 0.60101
selectivity[Enspsl].mu               3.57227 3.57227 3.55740 3.56716 3.56716 3.57318 3.57318 3.57227
selectivity[Enspsl].sigma_l          1.22206 1.22206 1.21712 1.22108 1.22108 1.22245 1.22245 1.22206
selectivity[Enspsl].sigma_r          50.00000 50.00000 14.62680 15.71370 15.71370 50.00000 50.00000 50.00000
selectivity[Wnspsl].mu               5.32952 5.32952 5.32047 5.34117 5.34117 5.32840 5.32840 5.32952
selectivity[Wnspsl].sigma_l          2.77846 2.77846 2.83259 2.83934 2.83934 2.77815 2.77815 2.77846
selectivity[Wnspsl].sigma_r          49.99970 49.99350 12.39220 13.37890 13.37890 50.00000 49.99970 50.00000
selectivity[Espsl].mu               11.25470 11.25460 10.79120 10.87880 10.87880 11.25670 11.25670 11.25470
selectivity[Espsl].sigma_l          10.85940 10.85940 11.97730 11.67750 11.67750 10.86740 10.86740 10.85940
selectivity[Espsl].sigma_r          4.02911 4.02912 3.97747 3.98165 3.98165 4.02625 4.02625 4.02912
selectivity[CRsl].mu               1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000 1.00000
selectivity[CRsl].sigma_l          46.48280 46.48140 45.87900 25.50000 25.50000 46.48280 46.48350 46.48250
selectivity[CRsl].sigma_r          10.08780 10.08780 9.12800 9.30042 9.30042 10.09280 10.09280 10.08780
selectivity[SAsl].mu               14.86480 14.86480 13.48440 14.25230 14.25230 14.86850 14.86850 14.86480
selectivity[SAsl].sigma_l          8.69280 8.69282 8.37005 8.75558 8.75558 8.69468 8.69468 8.69281
selectivity[SAsl].sigma_r          1.00000 1.00000 1.85902 1.31519 1.31519 1.00000 1.00000 1.00000
Casal2 parameter estimates: Percent Difference from betadiff_casal_flags_on
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
catchability[CSacous].q                0.000 0.000 -1.481 -0.772 -0.772 0.145 0.145 0.000
catchability[WCacous].q                0.000 0.000 4.930 3.904 3.904 -0.128 -0.128 0.000
catchability[CRsum].q                0.000 0.000 -11.564 -9.090 -9.090 -0.298 -0.299 0.000
catchability[SAsum].q                0.000 0.000 16.445 11.645 11.645 -0.172 -0.172 0.000
catchability[SAaut].q                0.000 0.000 16.030 11.196 11.196 -0.189 -0.189 0.000
observation[CRsumbio].process_error    0.000 0.000 0.505 0.292 0.292 -0.035 -0.035 0.000
observation[SAsumbio].process_error    0.000 -0.000 -1.677 -1.604 -1.604 0.040 0.040 0.000
process[recruit_E].b0               0.000 0.000 -1.306 -1.393 -1.393 -0.164 -0.164 0.000
process[recruit_W].b0               0.000 0.000 -5.913 -4.645 -4.645 0.064 0.064 0.000
process[Instant_mortality].m{west.sa}              0.000 0.000 6.756 5.415 5.415 0.070 0.070 0.000
time_varying[shifted_mu].a                0.000 0.000 5.526 5.293 5.293 0.166 0.166 0.000
process[recruit_E].ycs_values{1975} 0.000 0.000 -0.349 -0.431 -0.431 0.117 0.117 0.000
process[recruit_E].ycs_values{1976} 0.000 0.000 0.862 0.510 0.510 0.155 0.155 0.000
process[recruit_E].ycs_values{1977} 0.000 -0.000 1.563 1.107 1.107 0.128 0.127 0.000
process[recruit_E].ycs_values{1978} 0.000 0.001 2.728 2.036 2.036 0.132 0.132 0.001
process[recruit_E].ycs_values{1979} 0.000 0.000 2.161 1.590 1.590 0.107 0.107 0.000
process[recruit_E].ycs_values{1980} 0.000 0.000 2.094 1.584 1.584 0.073 0.073 0.000
process[recruit_E].ycs_values{1981} 0.000 0.000 2.333 1.783 1.783 0.072 0.072 0.000
process[recruit_E].ycs_values{1982} 0.000 0.000 2.082 1.605 1.605 0.055 0.055 0.000
process[recruit_E].ycs_values{1983} 0.000 0.000 2.015 1.547 1.547 -0.013 -0.013 0.000
process[recruit_E].ycs_values{1984} 0.000 0.000 1.638 1.251 1.251 0.022 0.022 0.000
process[recruit_E].ycs_values{1985} 0.000 0.000 1.444 1.111 1.111 0.009 0.009 0.000
process[recruit_E].ycs_values{1986} 0.000 0.000 1.124 0.872 0.872 0.022 0.022 0.000
process[recruit_E].ycs_values{1987} 0.000 0.000 0.630 0.437 0.437 -0.035 -0.035 0.000
process[recruit_E].ycs_values{1988} 0.000 0.000 0.580 0.440 0.440 -0.032 -0.032 0.000
process[recruit_E].ycs_values{1989} 0.000 0.000 0.576 0.495 0.495 0.040 0.040 0.000
process[recruit_E].ycs_values{1990} 0.000 0.000 -0.140 -0.091 -0.091 0.009 0.009 0.000
process[recruit_E].ycs_values{1991} 0.000 0.000 -0.477 -0.443 -0.443 -0.135 -0.136 0.000
process[recruit_E].ycs_values{1992} 0.000 0.000 -1.282 -1.050 -1.050 -0.260 -0.260 0.000
process[recruit_E].ycs_values{1993} 0.000 0.000 -1.104 -0.847 -0.847 -0.016 -0.016 0.000
process[recruit_E].ycs_values{1994} 0.000 0.000 -1.284 -1.003 -1.003 -0.123 -0.123 0.000
process[recruit_E].ycs_values{1995} 0.000 0.000 -1.127 -0.842 -0.842 0.002 0.002 0.000
process[recruit_E].ycs_values{1996} 0.000 0.000 -0.953 -0.704 -0.704 -0.008 -0.008 0.000
process[recruit_E].ycs_values{1997} 0.000 0.000 -0.778 -0.545 -0.545 -0.049 -0.049 0.000
process[recruit_E].ycs_values{1998} 0.000 0.000 -0.384 -0.232 -0.232 -0.061 -0.061 0.000
process[recruit_E].ycs_values{1999} 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
process[recruit_E].ycs_values{2000} 0.000 0.000 -0.707 -0.506 -0.506 -0.057 -0.057 0.000
process[recruit_E].ycs_values{2001} 0.000 0.000 -0.656 -0.482 -0.482 0.007 0.007 0.000
process[recruit_E].ycs_values{2002} 0.000 0.000 -0.594 -0.486 -0.486 -0.191 -0.191 0.000
process[recruit_E].ycs_values{2003} 0.000 0.000 -0.288 -0.190 -0.190 -0.031 -0.031 0.000
process[recruit_E].ycs_values{2004} 0.000 0.000 0.018 0.054 0.054 -0.043 -0.043 0.000
process[recruit_E].ycs_values{2005} 0.000 0.000 -0.358 -0.254 -0.254 -0.021 -0.021 0.000
process[recruit_E].ycs_values{2006} 0.000 0.000 -0.187 -0.116 -0.116 -0.046 -0.046 0.000
process[recruit_E].ycs_values{2007} 0.000 0.000 -0.364 -0.259 -0.259 -0.014 -0.015 0.000
process[recruit_E].ycs_values{2008} 0.000 0.000 -0.859 -0.685 -0.685 -0.184 -0.184 0.000
process[recruit_E].ycs_values{2009} 0.000 0.000 0.163 0.199 0.199 -0.007 -0.007 0.000
process[recruit_E].ycs_values{2010} 0.000 0.000 -1.417 -1.107 -1.107 -0.033 -0.033 0.000
process[recruit_E].ycs_values{2011} 0.000 0.000 -0.168 -0.044 -0.044 -0.028 -0.028 0.000
process[recruit_E].ycs_values{2012} 0.000 0.000 -0.440 -0.264 -0.264 0.030 0.030 0.000
process[recruit_E].ycs_values{2013} 0.000 0.000 -0.547 -0.357 -0.357 -0.002 -0.002 0.000
process[recruit_E].ycs_values{2014} 0.000 0.000 -0.511 -0.349 -0.349 -0.049 -0.049 0.000
process[recruit_E].ycs_values{2015} 0.000 0.000 2.325 1.769 1.769 -0.473 -0.473 -0.000
process[recruit_E].ycs_values{2016} 0.000 0.000 -0.512 -0.484 -0.484 0.045 0.045 0.000
process[recruit_W].ycs_values{1975} 0.000 -0.000 1.076 0.371 0.371 0.006 0.005 -0.000
process[recruit_W].ycs_values{1976} 0.000 -0.000 -2.814 -0.964 -0.964 0.013 0.014 -0.000
process[recruit_W].ycs_values{1977} 0.000 -0.000 1.098 2.180 2.180 -0.031 -0.031 -0.000
process[recruit_W].ycs_values{1978} 0.000 0.000 2.520 2.265 2.265 -0.047 -0.047 0.000
process[recruit_W].ycs_values{1979} 0.000 -0.000 1.589 1.451 1.451 -0.067 -0.067 -0.000
process[recruit_W].ycs_values{1980} 0.000 0.000 1.163 1.038 1.038 -0.023 -0.023 0.000
process[recruit_W].ycs_values{1981} 0.000 0.000 1.130 0.865 0.865 -0.027 -0.027 0.000
process[recruit_W].ycs_values{1982} 0.000 0.000 0.350 0.237 0.237 -0.047 -0.047 0.000
process[recruit_W].ycs_values{1983} 0.000 0.000 0.334 0.209 0.209 0.076 0.076 0.000
process[recruit_W].ycs_values{1984} 0.000 0.000 0.343 0.109 0.109 0.125 0.125 0.000
process[recruit_W].ycs_values{1985} 0.000 0.000 0.005 -0.153 -0.153 0.103 0.103 0.000
process[recruit_W].ycs_values{1986} 0.000 0.000 -0.142 -0.076 -0.076 -0.055 -0.055 0.000
process[recruit_W].ycs_values{1987} 0.000 -0.001 0.161 0.344 0.344 0.039 0.039 -0.001
process[recruit_W].ycs_values{1988} 0.000 0.000 0.128 0.328 0.328 0.098 0.099 0.000
process[recruit_W].ycs_values{1989} 0.000 0.000 0.120 0.158 0.158 -0.003 -0.003 0.000
process[recruit_W].ycs_values{1990} 0.000 0.000 0.359 0.267 0.267 -0.037 -0.037 0.000
process[recruit_W].ycs_values{1991} 0.000 -0.000 -0.292 -0.102 -0.102 -0.009 -0.009 -0.000
process[recruit_W].ycs_values{1992} 0.000 0.000 0.078 0.004 0.004 0.021 0.021 0.000
process[recruit_W].ycs_values{1993} 0.000 0.000 -0.117 -0.196 -0.196 -0.011 -0.011 0.000
process[recruit_W].ycs_values{1994} 0.000 -0.000 -0.430 -0.400 -0.400 -0.023 -0.023 -0.000
process[recruit_W].ycs_values{1995} 0.000 0.000 -0.425 -0.446 -0.446 -0.054 -0.054 0.000
process[recruit_W].ycs_values{1996} 0.000 0.000 -0.358 -0.468 -0.468 -0.028 -0.028 0.000
process[recruit_W].ycs_values{1997} 0.000 0.000 -0.374 -0.496 -0.496 0.147 0.147 0.000
process[recruit_W].ycs_values{1998} 0.000 0.000 -1.223 -1.151 -1.151 0.099 0.099 0.000
process[recruit_W].ycs_values{1999} 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
process[recruit_W].ycs_values{2000} 0.000 -0.000 -0.433 -0.463 -0.463 0.117 0.117 0.000
process[recruit_W].ycs_values{2001} 0.000 -0.000 -0.417 -0.409 -0.409 0.037 0.037 0.000
process[recruit_W].ycs_values{2002} 0.000 0.000 0.121 0.022 0.022 0.029 0.029 0.000
process[recruit_W].ycs_values{2003} 0.000 0.000 0.293 0.153 0.153 0.039 0.039 0.000
process[recruit_W].ycs_values{2004} 0.000 0.000 0.382 0.235 0.235 0.045 0.045 0.000
process[recruit_W].ycs_values{2005} 0.000 0.000 0.543 0.366 0.366 0.017 0.017 0.000
process[recruit_W].ycs_values{2006} 0.000 0.000 -0.009 -0.076 -0.076 0.015 0.015 0.000
process[recruit_W].ycs_values{2007} 0.000 0.000 -0.331 -0.338 -0.338 -0.025 -0.025 0.000
process[recruit_W].ycs_values{2008} 0.000 -0.000 -0.079 -0.118 -0.118 0.080 0.080 0.000
process[recruit_W].ycs_values{2009} 0.000 0.000 -1.114 -0.958 -0.958 -0.024 -0.024 0.000
process[recruit_W].ycs_values{2010} 0.000 0.000 0.702 0.538 0.538 0.055 0.055 0.000
process[recruit_W].ycs_values{2011} 0.000 0.000 -0.918 -0.837 -0.837 -0.041 -0.041 0.000
process[recruit_W].ycs_values{2012} 0.000 0.000 -0.809 -0.750 -0.750 -0.075 -0.075 0.000
process[recruit_W].ycs_values{2013} 0.000 0.000 -0.250 -0.224 -0.224 -0.052 -0.052 0.000
process[recruit_W].ycs_values{2014} 0.000 0.000 -0.635 -0.541 -0.541 -0.081 -0.081 0.000
process[recruit_W].ycs_values{2015} 0.000 0.000 -0.204 -0.109 -0.109 0.098 0.098 0.000
process[recruit_W].ycs_values{2016} 0.000 0.000 -0.513 -0.485 -0.485 0.045 0.045 0.000
selectivity[sel_Whome].v{1}             0.000 0.000 -2.983 -2.014 -2.014 -0.177 -0.177 0.000
selectivity[sel_Whome].v{2}             0.000 0.000 -10.686 -8.428 -8.428 -0.371 -0.371 0.000
selectivity[sel_Whome].v{3}             0.000 0.000 -4.208 -4.031 -4.031 -0.431 -0.431 0.000
selectivity[sel_Whome].v{4}             0.000 0.000 -3.175 -5.048 -5.048 -0.345 -0.344 0.000
selectivity[sel_Whome].v{5}             0.000 0.000 -10.188 -8.495 -8.495 -1.420 -1.420 -0.000
selectivity[sel_Whome].v{6}             0.000 -0.001 -4.052 -4.361 -4.361 1.488 1.489 0.001
selectivity[sel_Whome].v{7}             0.000 0.012 3.052 -3.795 -3.795 -31.618 -31.632 -0.003
selectivity[sel_Espmg].v{1}             0.000 0.000 0.012 -0.412 -0.412 -0.081 -0.081 0.000
selectivity[sel_Espmg].v{2}             0.000 0.000 -0.491 -0.757 -0.757 -0.073 -0.073 0.000
selectivity[sel_Espmg].v{3}             0.000 0.000 -0.997 -1.107 -1.107 -0.078 -0.078 0.000
selectivity[sel_Espmg].v{4}             0.000 0.000 -1.454 -1.434 -1.434 -0.079 -0.079 0.000
selectivity[sel_Espmg].v{5}             0.000 0.000 -1.747 -1.633 -1.633 -0.069 -0.069 0.000
selectivity[sel_Espmg].v{6}             0.000 0.000 -1.620 -1.500 -1.500 -0.063 -0.063 0.000
selectivity[sel_Espmg].v{7}             0.000 0.000 -1.566 -1.452 -1.452 -0.062 -0.062 0.000
selectivity[sel_Espmg].v{8}             0.000 0.000 0.703 0.468 0.468 -0.060 -0.060 -0.000
selectivity[sel_Wspmg].v{1}             0.000 0.000 0.065 -0.586 -0.586 -0.033 -0.033 0.000
selectivity[sel_Wspmg].v{2}             0.000 0.000 2.007 1.252 1.252 0.010 0.010 0.000
selectivity[sel_Wspmg].v{3}             0.000 0.000 -0.057 -0.037 -0.037 -0.008 -0.008 0.000
selectivity[sel_Wspmg].v{4}             0.000 0.000 -0.118 -0.012 -0.012 -0.016 -0.016 0.000
selectivity[sel_Wspmg].v{5}             0.000 0.000 -0.179 -0.066 -0.066 0.026 0.026 0.000
selectivity[sel_Wspmg].v{6}             0.000 0.000 -0.820 -0.597 -0.597 -0.187 -0.187 0.000
selectivity[sel_Wspmg].v{7}             0.000 -0.000 -1.025 -0.718 -0.718 0.447 0.447 0.000
selectivity[sel_Wspmg].v{8}             0.000 0.000 1.166 0.788 0.788 -0.088 -0.088 0.000
selectivity[Enspsl].mu               0.000 0.000 0.416 0.143 0.143 -0.025 -0.025 0.000
selectivity[Enspsl].sigma_l          0.000 0.000 0.404 0.080 0.080 -0.032 -0.032 0.000
selectivity[Enspsl].sigma_r          0.000 0.000 70.746 68.573 68.573 0.000 0.000 0.000
selectivity[Wnspsl].mu               0.000 0.000 0.170 -0.219 -0.219 0.021 0.021 0.000
selectivity[Wnspsl].sigma_l          0.000 0.000 -1.948 -2.191 -2.191 0.011 0.011 0.000
selectivity[Wnspsl].sigma_r          0.000 0.012 75.215 73.242 73.242 -0.001 0.000 -0.001
selectivity[Espsl].mu               0.000 0.001 4.118 3.340 3.340 -0.018 -0.018 0.000
selectivity[Espsl].sigma_l          0.000 0.000 -10.294 -7.534 -7.534 -0.074 -0.074 0.000
selectivity[Espsl].sigma_r          0.000 -0.000 1.282 1.178 1.178 0.071 0.071 -0.000
selectivity[CRsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
selectivity[CRsl].sigma_l          0.000 0.003 1.299 45.141 45.141 0.000 -0.002 0.001
selectivity[CRsl].sigma_r          0.000 0.000 9.514 7.805 7.805 -0.050 -0.050 0.000
selectivity[SAsl].mu               0.000 0.000 9.286 4.120 4.120 -0.025 -0.025 0.000
selectivity[SAsl].sigma_l          0.000 -0.000 3.713 -0.722 -0.722 -0.022 -0.022 -0.000
selectivity[SAsl].sigma_r          0.000 0.000 -85.902 -31.519 -31.519 0.000 0.000 0.000

CASAL objective function component values
Component Base_Model Sensitivity_1
CRsumbio -31.030 -31.030
CSacous -9.835 -9.836
SAautbio -3.984 -3.984
SAsumbio -6.146 -6.146
WCacous -5.916 -5.916
CRsumage 323.800 323.800
SAautage 35.120 35.120
SAsumage 221.100 221.100
EnspOLF 24.280 24.280
Enspage 256.100 256.100
Espage 581.500 581.500
WnspOLF 70.250 70.250
Wnspage 157.000 157.000
Wspage 364.800 364.800
pspawn -13.130 -13.130
pspawn_1993 -6.015 -6.015
prior_on_q[CSacous].q -0.839 -0.839
prior_on_q[WCacous].q -1.202 -1.202
prior_on_q[CRsum].q -2.207 -2.207
prior_on_q[SAsum].q -1.557 -1.557
prior_on_q[SAaut].q -1.762 -1.762
prior_on_relative_abundance[CRsumbio].cv_process_error 0.000 0.000
prior_on_relative_abundance[SAsumbio].cv_process_error 0.000 0.000
prior_on_log_B0_total 0.000 0.000
prior_on_B0_prop_stock1 12.560 12.560
prior_on_natural_mortality.all -1.217 -1.217
prior_on_selectivity[Wspsl].shift_a 0.378 0.378
prior_on_recruitment[E].YCS -13.750 -13.750
prior_on_recruitment[W].YCS -1.785 -1.785
prior_on_migration[Whome].rates_all 0.000 0.000
prior_on_migration[Espmg].rates_all 0.000 0.000
prior_on_migration[Wspmg].rates_all 0.000 0.000
prior_on_selectivity[Enspsl].all 0.000 0.000
prior_on_selectivity[Wnspsl].all 0.000 0.000
prior_on_selectivity[Espsl].all 0.000 0.000
prior_on_selectivity[CRsl].all 0.000 0.000
prior_on_selectivity[SAsl].all 0.000 0.000
Umax_Ensp1 0.000 0.000
Umax_Ensp2 0.000 0.000
Umax_Wnsp1 0.000 0.000
Umax_Wnsp2 0.000 0.000
Umax_Esp 0.000 0.000
Umax_Wsp 0.000 0.000
YCS.eq.16 0.000 0.000
sp.migr 0.013 0.013
Total 1947.000 1947.000
Casal2 objective function component values
rownames betadiff_casal_flags_on betadiff_casal_flags_off betadiff_casal_flags_on_low_tol cppad_casal_flags_on cppad_casal_flags_off adolc_casal_flags_on adolc_casal_flags_off adolc_casal_flags_on_low_tol
observation->CSacous-1991                  2.344 2.344 2.417 2.404 2.404 2.342 2.342 2.344
observation->CSacous-1993                  -0.577 -0.577 -0.591 -0.588 -0.588 -0.577 -0.577 -0.577
observation->CSacous-1994                  -0.016 -0.016 -0.034 -0.030 -0.030 -0.016 -0.016 -0.016
observation->CSacous-1995                  -0.562 -0.562 -0.568 -0.567 -0.567 -0.562 -0.562 -0.562
observation->CSacous-1996                  -0.027 -0.027 0.022 0.013 0.013 -0.027 -0.027 -0.027
observation->CSacous-1997                  -0.912 -0.912 -0.895 -0.899 -0.899 -0.912 -0.912 -0.912
observation->CSacous-1998                  -0.055 -0.055 0.008 -0.004 -0.004 -0.054 -0.054 -0.055
observation->CSacous-1999                  -1.025 -1.025 -1.009 -1.012 -1.012 -1.025 -1.025 -1.025
observation->CSacous-2001                  -1.217 -1.217 -1.210 -1.211 -1.211 -1.217 -1.217 -1.217
observation->CSacous-2002                  -0.297 -0.297 -0.349 -0.338 -0.338 -0.297 -0.297 -0.297
observation->CSacous-2003                  -0.845 -0.845 -0.868 -0.863 -0.863 -0.845 -0.845 -0.845
observation->CSacous-2005                  -0.929 -0.929 -0.927 -0.927 -0.927 -0.929 -0.929 -0.929
observation->CSacous-2006                  -0.939 -0.939 -0.953 -0.950 -0.950 -0.939 -0.939 -0.939
observation->CSacous-2007                  -0.623 -0.623 -0.593 -0.600 -0.600 -0.623 -0.623 -0.623
observation->CSacous-2008                  -1.094 -1.094 -1.133 -1.125 -1.125 -1.094 -1.094 -1.094
observation->CSacous-2009                  -0.186 -0.186 -0.089 -0.110 -0.110 -0.185 -0.185 -0.186
observation->CSacous-2011                  -1.021 -1.021 -0.995 -1.000 -1.000 -1.021 -1.021 -1.021
observation->CSacous-2013                  -0.892 -0.892 -0.846 -0.855 -0.855 -0.892 -0.892 -0.892
observation->CSacous-2015                  -0.191 -0.191 -0.142 -0.150 -0.150 -0.190 -0.190 -0.191
observation->CSacous-2017                  -1.020 -1.020 -1.021 -1.021 -1.021 -1.020 -1.020 -1.020
observation->WCacous-1988                  -0.588 -0.588 -0.589 -0.588 -0.588 -0.588 -0.588 -0.588
observation->WCacous-1989                  -0.184 -0.184 -0.159 -0.168 -0.168 -0.183 -0.183 -0.184
observation->WCacous-1990                  -0.331 -0.331 -0.323 -0.327 -0.327 -0.332 -0.332 -0.331
observation->WCacous-1991                  -0.425 -0.425 -0.425 -0.425 -0.425 -0.425 -0.425 -0.425
observation->WCacous-1992                  -0.744 -0.744 -0.744 -0.744 -0.744 -0.744 -0.744 -0.744
observation->WCacous-1993                  -0.371 -0.371 -0.380 -0.374 -0.374 -0.369 -0.369 -0.371
observation->WCacous-1997                  -0.055 -0.055 -0.041 -0.043 -0.043 -0.054 -0.054 -0.055
observation->WCacous-2000                  -1.264 -1.264 -1.273 -1.272 -1.272 -1.265 -1.265 -1.264
observation->WCacous-2012                  -0.906 -0.906 -0.889 -0.896 -0.896 -0.906 -0.906 -0.906
observation->WCacous-2013                  -1.079 -1.079 -1.078 -1.079 -1.079 -1.079 -1.079 -1.079
observation->CRsumbio-1992                  -1.634 -1.634 -1.650 -1.647 -1.647 -1.634 -1.634 -1.634
observation->CRsumbio-1993                  0.041 0.041 0.033 0.043 0.043 0.040 0.040 0.041
observation->CRsumbio-1994                  -1.761 -1.761 -1.760 -1.760 -1.760 -1.760 -1.760 -1.761
observation->CRsumbio-1995                  -1.431 -1.431 -1.403 -1.406 -1.406 -1.425 -1.425 -1.431
observation->CRsumbio-1996                  -1.691 -1.691 -1.701 -1.699 -1.699 -1.690 -1.690 -1.691
observation->CRsumbio-1997                  -0.609 -0.609 -0.642 -0.635 -0.635 -0.607 -0.607 -0.609
observation->CRsumbio-1998                  -1.205 -1.205 -1.211 -1.210 -1.210 -1.203 -1.203 -1.205
observation->CRsumbio-1999                  -0.950 -0.950 -0.914 -0.919 -0.919 -0.953 -0.953 -0.950
observation->CRsumbio-2000                  -1.629 -1.629 -1.633 -1.632 -1.632 -1.629 -1.629 -1.629
observation->CRsumbio-2001                  -1.773 -1.773 -1.776 -1.775 -1.775 -1.773 -1.773 -1.773
observation->CRsumbio-2002                  -1.205 -1.205 -1.206 -1.206 -1.206 -1.209 -1.209 -1.205
observation->CRsumbio-2003                  -1.748 -1.748 -1.744 -1.744 -1.744 -1.749 -1.749 -1.748
observation->CRsumbio-2004                  -0.821 -0.821 -0.802 -0.803 -0.803 -0.818 -0.818 -0.821
observation->CRsumbio-2005                  -1.470 -1.470 -1.477 -1.477 -1.477 -1.471 -1.471 -1.470
observation->CRsumbio-2006                  -1.314 -1.314 -1.299 -1.306 -1.306 -1.314 -1.314 -1.314
observation->CRsumbio-2007                  -0.726 -0.726 -0.767 -0.756 -0.756 -0.727 -0.727 -0.726
observation->CRsumbio-2008                  -0.376 -0.376 -0.409 -0.402 -0.402 -0.373 -0.373 -0.376
observation->CRsumbio-2009                  -0.587 -0.587 -0.547 -0.559 -0.559 -0.586 -0.586 -0.587
observation->CRsumbio-2010                  -1.350 -1.350 -1.362 -1.359 -1.359 -1.349 -1.349 -1.350
observation->CRsumbio-2011                  -1.094 -1.094 -1.109 -1.105 -1.105 -1.096 -1.096 -1.094
observation->CRsumbio-2012                  -1.438 -1.438 -1.451 -1.448 -1.448 -1.439 -1.439 -1.438
observation->CRsumbio-2013                  -1.494 -1.494 -1.490 -1.491 -1.491 -1.494 -1.494 -1.494
observation->CRsumbio-2014                  -1.768 -1.768 -1.772 -1.770 -1.770 -1.768 -1.768 -1.768
observation->CRsumbio-2016                  -1.411 -1.411 -1.414 -1.411 -1.411 -1.410 -1.410 -1.411
observation->CRsumbio-2018                  -1.552 -1.552 -1.556 -1.554 -1.554 -1.552 -1.552 -1.552
observation->SAsumbio-1992                  -0.596 -0.596 -0.593 -0.588 -0.588 -0.597 -0.597 -0.596
observation->SAsumbio-1993                  -0.314 -0.314 -0.319 -0.309 -0.309 -0.314 -0.314 -0.314
observation->SAsumbio-1994                  0.194 0.194 0.166 0.186 0.186 0.196 0.196 0.194
observation->SAsumbio-2001                  -0.834 -0.834 -0.825 -0.822 -0.822 -0.835 -0.835 -0.834
observation->SAsumbio-2002                  -0.794 -0.794 -0.774 -0.777 -0.777 -0.794 -0.794 -0.794
observation->SAsumbio-2003                  -0.836 -0.836 -0.822 -0.825 -0.825 -0.837 -0.837 -0.836
observation->SAsumbio-2004                  0.735 0.735 0.739 0.734 0.734 0.732 0.732 0.735
observation->SAsumbio-2005                  -0.255 -0.255 -0.201 -0.218 -0.218 -0.258 -0.258 -0.255
observation->SAsumbio-2006                  -0.598 -0.598 -0.553 -0.558 -0.558 -0.600 -0.600 -0.598
observation->SAsumbio-2007                  0.637 0.637 0.626 0.654 0.654 0.636 0.636 0.637
observation->SAsumbio-2008                  -0.463 -0.463 -0.449 -0.462 -0.462 -0.461 -0.461 -0.463
observation->SAsumbio-2009                  -0.584 -0.584 -0.583 -0.583 -0.583 -0.585 -0.585 -0.584
observation->SAsumbio-2010                  -0.146 -0.146 -0.147 -0.147 -0.147 -0.143 -0.143 -0.146
observation->SAsumbio-2012                  -0.848 -0.848 -0.834 -0.835 -0.835 -0.848 -0.848 -0.848
observation->SAsumbio-2013                  -0.796 -0.796 -0.789 -0.786 -0.786 -0.797 -0.797 -0.796
observation->SAsumbio-2015                  -0.201 -0.201 -0.175 -0.189 -0.189 -0.200 -0.200 -0.201
observation->SAsumbio-2017                  -0.638 -0.638 -0.616 -0.620 -0.620 -0.638 -0.638 -0.638
observation->SAautbio-1992                  -1.460 -1.460 -1.445 -1.450 -1.450 -1.459 -1.459 -1.460
observation->SAautbio-1996                  -1.232 -1.232 -1.260 -1.250 -1.250 -1.233 -1.233 -1.232
observation->SAautbio-1998                  -1.306 -1.306 -1.275 -1.284 -1.284 -1.308 -1.308 -1.306
observation->Espage-1988                  19.790 19.790 19.608 19.640 19.640 19.793 19.793 19.790
observation->Espage-1989                  15.857 15.857 15.864 15.862 15.862 15.858 15.858 15.857
observation->Espage-1990                  21.486 21.486 21.435 21.446 21.446 21.488 21.488 21.486
observation->Espage-1991                  20.640 20.640 20.605 20.612 20.612 20.641 20.641 20.640
observation->Espage-1992                  24.092 24.092 24.008 24.020 24.020 24.089 24.089 24.092
observation->Espage-1993                  19.304 19.304 19.334 19.328 19.328 19.305 19.305 19.304
observation->Espage-1994                  20.522 20.522 20.497 20.503 20.503 20.528 20.528 20.522
observation->Espage-1995                  22.530 22.530 22.563 22.559 22.559 22.541 22.541 22.530
observation->Espage-1996                  18.590 18.590 18.574 18.577 18.577 18.590 18.590 18.590
observation->Espage-1997                  20.978 20.978 20.966 20.964 20.964 20.974 20.974 20.978
observation->Espage-1998                  20.579 20.579 20.614 20.611 20.611 20.587 20.587 20.579
observation->Espage-1999                  22.875 22.875 22.854 22.862 22.862 22.886 22.886 22.875
observation->Espage-2000                  23.321 23.321 23.307 23.314 23.314 23.321 23.321 23.321
observation->Espage-2001                  20.735 20.735 20.778 20.773 20.773 20.735 20.735 20.735
observation->Espage-2002                  26.243 26.243 26.297 26.287 26.287 26.248 26.248 26.243
observation->Espage-2003                  19.118 19.118 19.118 19.120 19.120 19.120 19.120 19.118
observation->Espage-2004                  22.698 22.698 22.638 22.642 22.642 22.692 22.692 22.698
observation->Espage-2005                  26.120 26.120 26.068 26.070 26.070 26.122 26.122 26.120
observation->Espage-2006                  23.245 23.245 23.130 23.149 23.149 23.242 23.242 23.245
observation->Espage-2007                  25.277 25.277 25.204 25.210 25.210 25.274 25.274 25.277
observation->Espage-2008                  22.166 22.166 22.124 22.129 22.129 22.167 22.167 22.166
observation->Espage-2009                  18.691 18.691 18.691 18.690 18.690 18.691 18.691 18.691
observation->Espage-2010                  21.856 21.856 21.852 21.851 21.851 21.855 21.855 21.856
observation->Espage-2014                  20.614 20.614 20.657 20.648 20.648 20.616 20.616 20.614
observation->Espage-2015                  21.820 21.820 21.877 21.870 21.870 21.823 21.823 21.820
observation->Espage-2016                  21.203 21.203 21.204 21.204 21.204 21.204 21.204 21.203
observation->Espage-2017                  21.578 21.578 21.561 21.563 21.563 21.575 21.575 21.578
observation->Wspage-1988                  15.729 15.729 15.716 15.753 15.753 15.724 15.724 15.729
observation->Wspage-1989                  11.558 11.558 11.558 11.566 11.566 11.555 11.555 11.558
observation->Wspage-1990                  11.750 11.750 11.804 11.790 11.790 11.752 11.752 11.750
observation->Wspage-1991                  13.037 13.037 13.070 13.051 13.051 13.036 13.036 13.037
observation->Wspage-1992                  10.179 10.179 10.173 10.170 10.170 10.178 10.178 10.179
observation->Wspage-1993                  10.571 10.571 10.577 10.579 10.579 10.569 10.569 10.571
observation->Wspage-1994                  9.918 9.918 9.923 9.924 9.924 9.918 9.918 9.918
observation->Wspage-1995                  13.399 13.399 13.393 13.396 13.396 13.403 13.403 13.399
observation->Wspage-1996                  11.841 11.841 11.848 11.844 11.844 11.840 11.840 11.841
observation->Wspage-1997                  11.233 11.233 11.249 11.243 11.243 11.230 11.230 11.233
observation->Wspage-1998                  11.761 11.761 11.764 11.762 11.762 11.761 11.761 11.761
observation->Wspage-1999                  11.976 11.976 11.986 11.981 11.981 11.975 11.975 11.976
observation->Wspage-2000                  11.256 11.256 11.263 11.260 11.260 11.256 11.256 11.256
observation->Wspage-2001                  12.181 12.181 12.208 12.201 12.201 12.179 12.179 12.181
observation->Wspage-2002                  9.732 9.732 9.750 9.745 9.745 9.731 9.731 9.732
observation->Wspage-2003                  9.555 9.555 9.557 9.556 9.556 9.555 9.555 9.555
observation->Wspage-2004                  14.342 14.342 14.294 14.304 14.304 14.340 14.340 14.342
observation->Wspage-2005                  14.934 14.934 14.985 14.977 14.977 14.932 14.932 14.934
observation->Wspage-2006                  13.817 13.817 13.879 13.872 13.872 13.817 13.817 13.817
observation->Wspage-2007                  11.500 11.500 11.517 11.516 11.516 11.498 11.498 11.500
observation->Wspage-2008                  12.196 12.196 12.193 12.194 12.194 12.195 12.195 12.196
observation->Wspage-2009                  12.635 12.635 12.587 12.594 12.594 12.631 12.631 12.635
observation->Wspage-2010                  11.317 11.317 11.295 11.299 11.299 11.316 11.316 11.317
observation->Wspage-2011                  11.155 11.155 11.131 11.137 11.137 11.154 11.154 11.155
observation->Wspage-2012                  11.866 11.866 11.860 11.860 11.860 11.867 11.867 11.866
observation->Wspage-2013                  11.043 11.043 11.071 11.065 11.065 11.041 11.041 11.043
observation->Wspage-2014                  12.944 12.944 12.941 12.941 12.941 12.944 12.944 12.944
observation->Wspage-2015                  13.136 13.136 13.092 13.101 13.101 13.134 13.134 13.136
observation->Wspage-2016                  14.268 14.268 14.276 14.273 14.273 14.272 14.272 14.268
observation->Wspage-2017                  13.746 13.746 13.813 13.797 13.797 13.745 13.745 13.746
observation->EnspOLF-1992                  4.396 4.396 4.392 4.388 4.388 4.397 4.397 4.396
observation->EnspOLF-1994                  6.645 6.645 6.675 6.678 6.678 6.647 6.647 6.645
observation->EnspOLF-1996                  7.899 7.899 7.913 7.906 7.906 7.897 7.897 7.899
observation->EnspOLF-1998                  5.301 5.301 5.304 5.303 5.303 5.301 5.301 5.301
observation->Enspage-1999                  14.331 14.331 14.277 14.287 14.287 14.332 14.332 14.331
observation->Enspage-2000                  13.973 13.973 13.954 13.960 13.960 13.975 13.975 13.973
observation->Enspage-2001                  13.959 13.959 13.927 13.929 13.929 13.979 13.979 13.959
observation->Enspage-2002                  12.087 12.087 12.085 12.078 12.078 12.081 12.081 12.087
observation->Enspage-2003                  9.702 9.702 9.706 9.706 9.706 9.700 9.700 9.702
observation->Enspage-2004                  12.972 12.972 12.989 12.986 12.986 12.966 12.966 12.972
observation->Enspage-2005                  11.009 11.009 11.002 11.009 11.009 11.012 11.012 11.009
observation->Enspage-2006                  12.744 12.744 12.711 12.712 12.712 12.741 12.741 12.744
observation->Enspage-2007                  11.060 11.060 11.053 11.052 11.052 11.061 11.061 11.060
observation->Enspage-2008                  12.100 12.100 12.101 12.101 12.101 12.104 12.104 12.100
observation->Enspage-2009                  10.055 10.055 10.051 10.055 10.055 10.056 10.056 10.055
observation->Enspage-2010                  17.576 17.576 17.625 17.627 17.627 17.581 17.581 17.576
observation->Enspage-2011                  13.402 13.402 13.420 13.412 13.412 13.399 13.399 13.402
observation->Enspage-2012                  13.148 13.148 13.139 13.134 13.134 13.149 13.149 13.148
observation->Enspage-2013                  16.691 16.691 16.650 16.659 16.659 16.694 16.694 16.691
observation->Enspage-2014                  13.868 13.868 13.862 13.870 13.870 13.869 13.869 13.868
observation->Enspage-2015                  12.764 12.764 12.781 12.776 12.776 12.760 12.760 12.764
observation->Enspage-2016                  19.222 19.222 19.189 19.203 19.203 19.224 19.224 19.222
observation->Enspage-2017                  15.552 15.552 15.491 15.511 15.511 15.562 15.562 15.552
observation->WnspOLF-1992                  10.124 10.124 10.143 10.129 10.129 10.122 10.122 10.124
observation->WnspOLF-1993                  9.047 9.047 8.993 8.991 8.991 9.045 9.045 9.047
observation->WnspOLF-1994                  15.931 15.931 15.906 15.893 15.893 15.930 15.930 15.931
observation->WnspOLF-1996                  9.784 9.784 9.765 9.752 9.752 9.788 9.788 9.784
observation->WnspOLF-1999                  11.553 11.553 11.583 11.593 11.593 11.553 11.553 11.553
observation->WnspOLF-2000                  13.817 13.817 13.884 13.892 13.892 13.812 13.812 13.817
observation->Wnspage-2001                  8.036 8.036 7.991 7.994 7.994 8.032 8.032 8.036
observation->Wnspage-2002                  8.714 8.714 8.693 8.701 8.701 8.715 8.715 8.714
observation->Wnspage-2003                  10.473 10.473 10.497 10.507 10.507 10.473 10.473 10.473
observation->Wnspage-2004                  7.154 7.154 7.134 7.140 7.140 7.155 7.155 7.154
observation->Wnspage-2006                  9.590 9.590 9.555 9.551 9.551 9.589 9.589 9.590
observation->Wnspage-2007                  10.860 10.860 10.821 10.822 10.822 10.861 10.861 10.860
observation->Wnspage-2008                  12.422 12.422 12.437 12.435 12.435 12.425 12.425 12.422
observation->Wnspage-2009                  14.719 14.719 14.786 14.790 14.790 14.716 14.716 14.719
observation->Wnspage-2010                  11.405 11.405 11.364 11.370 11.370 11.405 11.405 11.405
observation->Wnspage-2011                  11.265 11.265 11.274 11.275 11.275 11.267 11.267 11.265
observation->Wnspage-2012                  10.453 10.453 10.466 10.465 10.465 10.454 10.454 10.453
observation->Wnspage-2013                  13.634 13.634 13.636 13.634 13.634 13.633 13.633 13.634
observation->Wnspage-2014                  12.609 12.609 12.590 12.597 12.597 12.608 12.608 12.609
observation->Wnspage-2016                  15.683 15.683 15.718 15.722 15.722 15.687 15.687 15.683
observation->CRsumage-1992                  15.570 15.570 15.558 15.566 15.566 15.584 15.584 15.570
observation->CRsumage-1993                  10.613 10.613 10.621 10.624 10.624 10.616 10.616 10.613
observation->CRsumage-1994                  18.174 18.174 18.122 18.130 18.130 18.170 18.170 18.174
observation->CRsumage-1995                  14.287 14.287 14.238 14.242 14.242 14.285 14.285 14.287
observation->CRsumage-1996                  11.566 11.566 11.623 11.607 11.607 11.567 11.567 11.566
observation->CRsumage-1997                  15.750 15.750 15.673 15.688 15.688 15.754 15.754 15.750
observation->CRsumage-1998                  14.686 14.686 14.699 14.690 14.690 14.690 14.690 14.686
observation->CRsumage-1999                  12.061 12.061 12.091 12.084 12.084 12.061 12.061 12.061
observation->CRsumage-2000                  14.326 14.326 14.284 14.283 14.283 14.323 14.323 14.326
observation->CRsumage-2001                  19.651 19.651 19.511 19.520 19.520 19.659 19.659 19.651
observation->CRsumage-2002                  10.971 10.971 10.960 10.960 10.960 10.969 10.969 10.971
observation->CRsumage-2003                  11.254 11.254 11.208 11.210 11.210 11.251 11.251 11.254
observation->CRsumage-2004                  9.556 9.556 9.570 9.561 9.561 9.553 9.553 9.556
observation->CRsumage-2005                  12.749 12.749 12.643 12.654 12.654 12.753 12.753 12.749
observation->CRsumage-2006                  10.317 10.317 10.313 10.317 10.317 10.316 10.316 10.317
observation->CRsumage-2007                  13.561 13.561 13.498 13.504 13.504 13.562 13.562 13.561
observation->CRsumage-2008                  11.665 11.665 11.637 11.639 11.639 11.661 11.661 11.665
observation->CRsumage-2009                  12.002 12.002 11.962 11.965 11.965 12.006 12.006 12.002
observation->CRsumage-2010                  11.052 11.052 11.050 11.055 11.055 11.048 11.048 11.052
observation->CRsumage-2011                  12.577 12.577 12.562 12.571 12.571 12.579 12.579 12.577
observation->CRsumage-2012                  17.230 17.230 17.146 17.141 17.141 17.228 17.228 17.230
observation->CRsumage-2013                  11.845 11.845 11.812 11.822 11.822 11.843 11.843 11.845
observation->CRsumage-2014                  11.288 11.288 11.267 11.271 11.271 11.286 11.286 11.288
observation->CRsumage-2016                  9.867 9.867 9.837 9.847 9.847 9.866 9.866 9.867
observation->CRsumage-2018                  11.935 11.935 11.884 11.895 11.895 11.931 11.931 11.935
observation->SAsumage-1992                  12.241 12.241 12.248 12.269 12.269 12.246 12.246 12.241
observation->SAsumage-1993                  12.483 12.483 12.474 12.502 12.502 12.470 12.470 12.483
observation->SAsumage-1994                  10.808 10.808 10.808 10.818 10.818 10.811 10.811 10.808
observation->SAsumage-2001                  12.762 12.762 12.803 12.839 12.839 12.749 12.749 12.762
observation->SAsumage-2002                  12.216 12.216 12.210 12.254 12.254 12.209 12.209 12.216
observation->SAsumage-2003                  13.388 13.388 13.323 13.386 13.386 13.386 13.386 13.388
observation->SAsumage-2004                  11.064 11.064 10.981 11.005 11.005 11.067 11.067 11.064
observation->SAsumage-2005                  15.280 15.280 15.465 15.386 15.386 15.278 15.278 15.280
observation->SAsumage-2006                  14.110 14.110 14.111 14.078 14.078 14.112 14.112 14.110
observation->SAsumage-2007                  10.649 10.649 10.593 10.639 10.639 10.649 10.649 10.649
observation->SAsumage-2008                  13.766 13.766 13.920 13.836 13.836 13.771 13.771 13.766
observation->SAsumage-2009                  15.520 15.520 15.565 15.530 15.530 15.513 15.513 15.520
observation->SAsumage-2010                  15.082 15.082 15.200 15.130 15.130 15.081 15.081 15.082
observation->SAsumage-2012                  13.439 13.439 13.469 13.479 13.479 13.437 13.437 13.439
observation->SAsumage-2013                  11.956 11.956 11.976 11.982 11.982 11.954 11.954 11.956
observation->SAsumage-2015                  13.524 13.524 13.557 13.540 13.540 13.522 13.522 13.524
observation->SAsumage-2017                  12.487 12.487 12.476 12.478 12.478 12.492 12.492 12.487
observation->SAautage-1992                  11.819 11.819 11.829 11.857 11.857 11.809 11.809 11.819
observation->SAautage-1996                  10.450 10.450 10.453 10.426 10.426 10.449 10.449 10.450
observation->SAautage-1998                  12.810 12.810 12.811 12.835 12.835 12.809 12.809 12.810
observation->pspawn_1993                  -6.016 -6.016 -6.021 -6.015 -6.015 -6.017 -6.017 -6.016
observation->pspawn-1992                  -4.852 -4.852 -4.817 -4.829 -4.829 -4.848 -4.848 -4.852
observation->pspawn-1998                  -8.291 -8.291 -8.306 -8.300 -8.300 -8.284 -8.284 -8.291
prior->CSacousq->catchability[CSacous].q                -0.847 -0.847 -0.831 -0.839 -0.839 -0.849 -0.849 -0.847
prior->WCacousq->catchability[WCacous].q                -1.163 -1.163 -1.212 -1.202 -1.202 -1.162 -1.162 -1.163
prior->CRsumq->catchability[CRsum].q                -2.153 -2.153 -2.217 -2.207 -2.207 -2.155 -2.155 -2.153
prior->SAsumq->catchability[SAsum].q                -1.760 -1.760 -1.450 -1.557 -1.557 -1.762 -1.762 -1.760
prior->SAautq->catchability[SAaut].q                -1.911 -1.911 -1.677 -1.762 -1.762 -1.913 -1.913 -1.911
prior->CR_process_error->observation[CRsumbio].process_error    0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SA_process_error->observation[SAsumbio].process_error    0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->B0_E_with_total_log_b0_prior->process[recruit_E].b0               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->B0_W_with_proportion_prior->process[recruit_W].b0               12.545 12.545 12.562 12.555 12.555 12.544 12.544 12.545
prior->M_all->process[Instant_mortality].m{west.sa}              -1.083 -1.083 -1.230 -1.217 -1.217 -1.085 -1.085 -1.083
prior->Wspsl_shift_param->time_varying[shifted_mu].a                0.422 0.422 0.376 0.378 0.378 0.420 0.420 0.422
prior->YCS_E->process[recruit_E].ycs_values{1975} -0.624 -0.624 -0.623 -0.623 -0.623 -0.624 -0.624 -0.624
prior->YCS_E->process[recruit_E].ycs_values{1976} -0.314 -0.314 -0.323 -0.319 -0.319 -0.316 -0.316 -0.314
prior->YCS_E->process[recruit_E].ycs_values{1977} -0.225 -0.225 -0.243 -0.238 -0.238 -0.227 -0.227 -0.225
prior->YCS_E->process[recruit_E].ycs_values{1978} 0.656 0.656 0.601 0.615 0.615 0.654 0.654 0.656
prior->YCS_E->process[recruit_E].ycs_values{1979} 0.086 0.086 0.053 0.062 0.062 0.084 0.084 0.086
prior->YCS_E->process[recruit_E].ycs_values{1980} -0.630 -0.630 -0.625 -0.627 -0.627 -0.630 -0.630 -0.630
prior->YCS_E->process[recruit_E].ycs_values{1981} -0.619 -0.619 -0.625 -0.623 -0.623 -0.619 -0.619 -0.619
prior->YCS_E->process[recruit_E].ycs_values{1982} -0.551 -0.551 -0.539 -0.542 -0.542 -0.550 -0.550 -0.551
prior->YCS_E->process[recruit_E].ycs_values{1983} -0.627 -0.627 -0.631 -0.630 -0.630 -0.627 -0.627 -0.627
prior->YCS_E->process[recruit_E].ycs_values{1984} -0.591 -0.591 -0.597 -0.596 -0.596 -0.591 -0.591 -0.591
prior->YCS_E->process[recruit_E].ycs_values{1985} -0.641 -0.641 -0.642 -0.642 -0.642 -0.641 -0.641 -0.641
prior->YCS_E->process[recruit_E].ycs_values{1986} -0.408 -0.408 -0.398 -0.400 -0.400 -0.408 -0.408 -0.408
prior->YCS_E->process[recruit_E].ycs_values{1987} 0.142 0.142 0.132 0.135 0.135 0.142 0.142 0.142
prior->YCS_E->process[recruit_E].ycs_values{1988} 0.025 0.025 0.017 0.019 0.019 0.026 0.026 0.025
prior->YCS_E->process[recruit_E].ycs_values{1989} -0.631 -0.631 -0.632 -0.632 -0.632 -0.631 -0.631 -0.631
prior->YCS_E->process[recruit_E].ycs_values{1990} 0.159 0.159 0.157 0.158 0.158 0.159 0.159 0.159
prior->YCS_E->process[recruit_E].ycs_values{1991} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1992} -0.643 -0.643 -0.642 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1993} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{1994} -0.531 -0.531 -0.523 -0.525 -0.525 -0.530 -0.530 -0.531
prior->YCS_E->process[recruit_E].ycs_values{1995} -0.534 -0.534 -0.540 -0.538 -0.538 -0.534 -0.534 -0.534
prior->YCS_E->process[recruit_E].ycs_values{1996} -0.573 -0.573 -0.578 -0.577 -0.577 -0.574 -0.574 -0.573
prior->YCS_E->process[recruit_E].ycs_values{1997} -0.623 -0.623 -0.621 -0.622 -0.622 -0.623 -0.623 -0.623
prior->YCS_E->process[recruit_E].ycs_values{1998} -0.511 -0.511 -0.514 -0.513 -0.513 -0.512 -0.512 -0.511
prior->YCS_E->process[recruit_E].ycs_values{1999} 2.014 2.014 2.014 2.014 2.014 2.014 2.014 2.014
prior->YCS_E->process[recruit_E].ycs_values{2000} -0.616 -0.616 -0.614 -0.614 -0.614 -0.616 -0.616 -0.616
prior->YCS_E->process[recruit_E].ycs_values{2001} -0.065 -0.065 -0.074 -0.071 -0.071 -0.065 -0.065 -0.065
prior->YCS_E->process[recruit_E].ycs_values{2002} -0.542 -0.542 -0.545 -0.545 -0.545 -0.543 -0.543 -0.542
prior->YCS_E->process[recruit_E].ycs_values{2003} -0.586 -0.586 -0.585 -0.585 -0.585 -0.586 -0.586 -0.586
prior->YCS_E->process[recruit_E].ycs_values{2004} -0.568 -0.568 -0.568 -0.568 -0.568 -0.568 -0.568 -0.568
prior->YCS_E->process[recruit_E].ycs_values{2005} -0.579 -0.579 -0.578 -0.578 -0.578 -0.579 -0.579 -0.579
prior->YCS_E->process[recruit_E].ycs_values{2006} -0.483 -0.483 -0.482 -0.482 -0.482 -0.483 -0.483 -0.483
prior->YCS_E->process[recruit_E].ycs_values{2007} -0.567 -0.567 -0.566 -0.566 -0.566 -0.567 -0.567 -0.567
prior->YCS_E->process[recruit_E].ycs_values{2008} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_E->process[recruit_E].ycs_values{2009} -0.561 -0.561 -0.561 -0.562 -0.562 -0.561 -0.561 -0.561
prior->YCS_E->process[recruit_E].ycs_values{2010} -0.031 -0.031 -0.050 -0.046 -0.046 -0.031 -0.031 -0.031
prior->YCS_E->process[recruit_E].ycs_values{2011} -0.408 -0.408 -0.407 -0.408 -0.408 -0.408 -0.408 -0.408
prior->YCS_E->process[recruit_E].ycs_values{2012} -0.019 -0.019 -0.025 -0.023 -0.023 -0.019 -0.019 -0.019
prior->YCS_E->process[recruit_E].ycs_values{2013} -0.238 -0.238 -0.244 -0.242 -0.242 -0.238 -0.238 -0.238
prior->YCS_E->process[recruit_E].ycs_values{2014} -0.317 -0.317 -0.312 -0.314 -0.314 -0.317 -0.317 -0.317
prior->YCS_E->process[recruit_E].ycs_values{2015} -0.284 -0.284 -0.308 -0.302 -0.302 -0.279 -0.279 -0.284
prior->YCS_E->process[recruit_E].ycs_values{2016} 0.364 0.364 0.373 0.373 0.373 0.363 0.363 0.364
prior->YCS_W->process[recruit_W].ycs_values{1975} -0.616 -0.616 -0.619 -0.617 -0.617 -0.616 -0.616 -0.616
prior->YCS_W->process[recruit_W].ycs_values{1976} -0.195 -0.195 -0.162 -0.184 -0.184 -0.195 -0.195 -0.195
prior->YCS_W->process[recruit_W].ycs_values{1977} -0.376 -0.376 -0.386 -0.396 -0.396 -0.376 -0.376 -0.376
prior->YCS_W->process[recruit_W].ycs_values{1978} -0.397 -0.397 -0.419 -0.417 -0.417 -0.396 -0.396 -0.397
prior->YCS_W->process[recruit_W].ycs_values{1979} -0.607 -0.607 -0.612 -0.612 -0.612 -0.607 -0.607 -0.607
prior->YCS_W->process[recruit_W].ycs_values{1980} -0.568 -0.568 -0.573 -0.573 -0.573 -0.567 -0.567 -0.568
prior->YCS_W->process[recruit_W].ycs_values{1981} -0.502 -0.502 -0.510 -0.508 -0.508 -0.502 -0.502 -0.502
prior->YCS_W->process[recruit_W].ycs_values{1982} -0.606 -0.606 -0.607 -0.607 -0.607 -0.606 -0.606 -0.606
prior->YCS_W->process[recruit_W].ycs_values{1983} -0.108 -0.108 -0.112 -0.111 -0.111 -0.109 -0.109 -0.108
prior->YCS_W->process[recruit_W].ycs_values{1984} -0.161 -0.161 -0.166 -0.163 -0.163 -0.163 -0.163 -0.161
prior->YCS_W->process[recruit_W].ycs_values{1985} -0.619 -0.619 -0.619 -0.620 -0.620 -0.619 -0.619 -0.619
prior->YCS_W->process[recruit_W].ycs_values{1986} -0.097 -0.097 -0.099 -0.098 -0.098 -0.098 -0.098 -0.097
prior->YCS_W->process[recruit_W].ycs_values{1987} 0.789 0.789 0.785 0.782 0.782 0.788 0.788 0.789
prior->YCS_W->process[recruit_W].ycs_values{1988} -0.251 -0.251 -0.252 -0.255 -0.255 -0.252 -0.252 -0.251
prior->YCS_W->process[recruit_W].ycs_values{1989} 1.207 1.207 1.210 1.211 1.211 1.207 1.207 1.207
prior->YCS_W->process[recruit_W].ycs_values{1990} 1.198 1.198 1.206 1.204 1.204 1.197 1.197 1.198
prior->YCS_W->process[recruit_W].ycs_values{1991} -0.081 -0.081 -0.077 -0.080 -0.080 -0.081 -0.081 -0.081
prior->YCS_W->process[recruit_W].ycs_values{1992} 0.480 0.480 0.479 0.480 0.480 0.480 0.480 0.480
prior->YCS_W->process[recruit_W].ycs_values{1993} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_W->process[recruit_W].ycs_values{1994} 0.014 0.014 0.020 0.020 0.020 0.014 0.014 0.014
prior->YCS_W->process[recruit_W].ycs_values{1995} -0.409 -0.409 -0.413 -0.413 -0.413 -0.410 -0.410 -0.409
prior->YCS_W->process[recruit_W].ycs_values{1996} -0.301 -0.301 -0.305 -0.306 -0.306 -0.301 -0.301 -0.301
prior->YCS_W->process[recruit_W].ycs_values{1997} -0.467 -0.467 -0.470 -0.471 -0.471 -0.466 -0.466 -0.467
prior->YCS_W->process[recruit_W].ycs_values{1998} -0.323 -0.323 -0.335 -0.334 -0.334 -0.322 -0.322 -0.323
prior->YCS_W->process[recruit_W].ycs_values{1999} 2.014 2.014 2.014 2.014 2.014 2.014 2.014 2.014
prior->YCS_W->process[recruit_W].ycs_values{2000} -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643 -0.643
prior->YCS_W->process[recruit_W].ycs_values{2001} 0.855 0.855 0.846 0.846 0.846 0.856 0.856 0.855
prior->YCS_W->process[recruit_W].ycs_values{2002} -0.222 -0.222 -0.223 -0.222 -0.222 -0.222 -0.222 -0.222
prior->YCS_W->process[recruit_W].ycs_values{2003} -0.612 -0.612 -0.613 -0.612 -0.612 -0.612 -0.612 -0.612
prior->YCS_W->process[recruit_W].ycs_values{2004} -0.570 -0.570 -0.572 -0.571 -0.571 -0.570 -0.570 -0.570
prior->YCS_W->process[recruit_W].ycs_values{2005} -0.574 -0.574 -0.577 -0.576 -0.576 -0.574 -0.574 -0.574
prior->YCS_W->process[recruit_W].ycs_values{2006} -0.280 -0.280 -0.280 -0.279 -0.279 -0.280 -0.280 -0.280
prior->YCS_W->process[recruit_W].ycs_values{2007} -0.438 -0.438 -0.436 -0.436 -0.436 -0.438 -0.438 -0.438
prior->YCS_W->process[recruit_W].ycs_values{2008} -0.464 -0.464 -0.463 -0.463 -0.463 -0.464 -0.464 -0.464
prior->YCS_W->process[recruit_W].ycs_values{2009} -0.514 -0.514 -0.507 -0.508 -0.508 -0.514 -0.514 -0.514
prior->YCS_W->process[recruit_W].ycs_values{2010} 0.070 0.070 0.080 0.078 0.078 0.071 0.071 0.070
prior->YCS_W->process[recruit_W].ycs_values{2011} 0.030 0.030 0.044 0.043 0.043 0.031 0.031 0.030
prior->YCS_W->process[recruit_W].ycs_values{2012} -0.049 -0.049 -0.060 -0.059 -0.059 -0.050 -0.050 -0.049
prior->YCS_W->process[recruit_W].ycs_values{2013} -0.488 -0.488 -0.490 -0.490 -0.490 -0.489 -0.489 -0.488
prior->YCS_W->process[recruit_W].ycs_values{2014} 1.727 1.727 1.745 1.742 1.742 1.730 1.730 1.727
prior->YCS_W->process[recruit_W].ycs_values{2015} 1.684 1.684 1.689 1.687 1.687 1.681 1.681 1.684
prior->YCS_W->process[recruit_W].ycs_values{2016} 0.364 0.364 0.373 0.373 0.373 0.363 0.363 0.364
prior->sel_Whome->selectivity[sel_Whome].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Whome->selectivity[sel_Whome].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Espmg_male->selectivity[sel_Espmg].v{8}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{1}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{2}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{3}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{4}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{5}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{6}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{7}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->sel_Wspmg_male->selectivity[sel_Wspmg].v{8}             0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_mu->selectivity[Enspsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_s_l->selectivity[Enspsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Enspsl_s_r->selectivity[Enspsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_mu->selectivity[Wnspsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_s_l->selectivity[Wnspsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Wnspsl_s_r->selectivity[Wnspsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_mu->selectivity[Espsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_s_l->selectivity[Espsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->Espsl_s_r->selectivity[Espsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_mu->selectivity[CRsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_s_l->selectivity[CRsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->CRsl_s_r->selectivity[CRsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_mu->selectivity[SAsl].mu               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_s_l->selectivity[SAsl].sigma_l          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
prior->SAsl_s_r->selectivity[SAsl].sigma_r          0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
additional_prior->YCS.eq.16               0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
additional_prior->sp.migr             0.009 0.009 0.015 0.013 0.013 0.009 0.009 0.009
jacobian->log_sum_b0                  0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
total_score                  1946.800 1946.800 1946.550 1946.540 1946.540 1946.810 1946.810 1946.800

## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 8.24015e-007 f = 1946.54"                                                        
## [2] "Successful convergence in optimise"                                                                       
## [3] "Minimiser achieved convergence after 599 quasi-Newton iterations using 669 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [2] "Successful convergence in optimise"                                                                                      
## [3] "Minimiser achieved convergence after 665 quasi-Newton iterations using 765 objective function evaluations"               
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 3.34904e-07 f = 1946.8"
## [2] "Successful convergence in optimise"             
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 5.42743e-07 f = 1946.8"
## [2] "Successful convergence in optimise"             
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 6.43769e-10 f = 1946.55"
## [2] "Successful convergence in optimise"              
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model convergence information"
##  [1] "Number of nonzeros in equality constraint Jacobian...:        0"
##  [2] "Number of nonzeros in inequality constraint Jacobian.:      133"
##  [3] "Number of nonzeros in Lagrangian Hessian.............:     8911"
##  [4] "Number of Iterations....: 56"                                   
##  [5] "Number of objective function evaluations             = 91"      
##  [6] "Number of objective gradient evaluations             = 57"      
##  [7] "Number of equality constraint evaluations            = 0"       
##  [8] "Number of inequality constraint evaluations          = 91"      
##  [9] "Number of equality constraint Jacobian evaluations   = 0"       
## [10] "Number of inequality constraint Jacobian evaluations = 57"      
## [11] "Number of Lagrangian Hessian evaluations             = 56"      
## [12] "EXIT: Optimal Solution Found."                                  
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model convergence information"
##  [1] "Number of nonzeros in equality constraint Jacobian...:        0"
##  [2] "Number of nonzeros in inequality constraint Jacobian.:      133"
##  [3] "Number of nonzeros in Lagrangian Hessian.............:     8911"
##  [4] "Number of Iterations....: 56"                                   
##  [5] "Number of objective function evaluations             = 95"      
##  [6] "Number of objective gradient evaluations             = 57"      
##  [7] "Number of equality constraint evaluations            = 0"       
##  [8] "Number of inequality constraint evaluations          = 95"      
##  [9] "Number of equality constraint Jacobian evaluations   = 0"       
## [10] "Number of inequality constraint Jacobian evaluations = 57"      
## [11] "Number of Lagrangian Hessian evaluations             = 56"      
## [12] "EXIT: Optimal Solution Found."                                  
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
##                  parameter estimate lower.bound upper.bound
## 1   recruitment[E].YCS[25]     0.06        0.06         8.6
## 2   recruitment[W].YCS[25]     0.06        0.06         8.6
## 3 selectivity[CRsl].all[1]        1           1          17
## 4 selectivity[CRsl].all[2]        1           1          50
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## $warnings_found
## [1] 9
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## $warnings_found
## [1] 8
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 cppad_casal_flags_on model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 cppad_casal_flags_off model warnings"
## $warnings_found
## [1] 6
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## $warnings_found
## [1] 10
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## $warnings_found
## [1] 10
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[sel_Whome].v{7}' was within 0.001 of upper bound 1"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_9
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"
## 
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## $warnings_found
## [1] 9
## 
## $warning_0
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 134 estimates, now have 133"
## 
## $warning_1
## [1] "estimated parameter 'process[recruit_E].b0' was within 0.001 of upper bound 16.2"
## 
## $warning_2
## [1] "estimated parameter 'process[recruit_W].b0' was within 0.001 of upper bound 0.59"
## 
## $warning_3
## [1] "estimated parameter 'process[recruit_E].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_4
## [1] "estimated parameter 'process[recruit_W].ycs_values{1999}' was within 0.001 of lower bound 0.06"
## 
## $warning_5
## [1] "estimated parameter 'selectivity[Enspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_6
## [1] "estimated parameter 'selectivity[Wnspsl].sigma_r' was within 0.001 of upper bound 50"
## 
## $warning_7
## [1] "estimated parameter 'selectivity[CRsl].mu' was within 0.001 of lower bound 1"
## 
## $warning_8
## [1] "estimated parameter 'selectivity[SAsl].sigma_r' was within 0.001 of lower bound 1"
## 
## $type
## [1] "warnings"

1.4 Matching of outputs

Time series comparisons with CASAL base model results

## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run cppad_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Ensp1 match: yes"
## [1] "Actual catches for Wnsp1 match: yes"
## [1] "Actual catches for Ensp2 match: yes"
## [1] "Actual catches for Wnsp2 match: yes"
## [1] "Actual catches for Esp match: yes"
## [1] "Actual catches for Wsp match: yes"
## [1] ""

Derived quantities

SB0, SBcurrent, MSY, F_MSY, others...

1.5 Plots

Comparison plots

## [1] "CASAL base parameter correlation range (excluding 1.0): -0.9914 0.9969"

## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9324 0.9968"

## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.885752934097467 0.99666069281371"
## Warning in min(x): no non-missing arguments to min; returning Inf
## Warning in max(x): no non-missing arguments to max; returning -Inf

## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): Inf -Inf"

## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.941210827673328 0.996675425300119"

## [1] "Casal2 cppad_casal_flags_on parameter correlation range (excluding 1.0): 0 0"

## [1] "Casal2 cppad_casal_flags_off parameter correlation range (excluding 1.0): 0 0"

## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.888008228979284 0.996702169265358"

## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.879030624758007 0.996750351609019"

## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.888255399343669 0.996710438661015"